New lib BioParser
bioinfornatics
bioinfornatics at fedoraproject.org
Sun Dec 16 09:46:27 PST 2012
Dear,
I wrote some parser for biology purpose.
Goal:
- Parser should not load the file in memory
- be efficient
- use Memory mapped file more as possible
Simen get a good point, module shown into learn section could interest
some developer. For this reason i create an organization into github
named bioparser-developers . Then you are all welcome to fork,fix,commit
to the project bioparser:
https://github.com/bioparser-developers/bioparser/tree/master/src/parser
I do not know if we should have a more generic name and add other format
than biology. You have the power to choose and contribute :)
Current supported format:
- Fasta mmfile yes
- Fasta mmfile yes
- UCSC mmfile no
- matrix mmfile no
Note: matrix file is not a standard just data stored into a file as:
[ [1, 2, 3], [4, 5, 6] ]
stored too
1 2 3
4 5 6
thanks to all
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