Variant Graph Support to BioD
james.blachly at gmail.com
Tue May 28 21:24:54 UTC 2019
On 5/28/19 5:41 AM, Njagi Mwaniki wrote:
> Hello I’m Njagi Mwaniki,
> I am part of the 2019 Google Summer of Code under the Open
> Bioinformatics Foundation with a project aimed to add variation graph
> support to BioD under mentors George Githinji and Pjotr Prins.
> VG is a set of tools that already implements variation graphs but which
> is a bit broad in its focus. In this project we are building upon the
> existing tools and knowledge from VG and looking for ways to improve its
> performance in terms of lookups and also its application with small
> genomes, specifically viruses and smaller mammals such as mice.
This sounds like a great project. Be aware that the size of the
organism (e.g. mouse) has naught to do with the size of its genome.
More information about the Digitalmars-d-announce