Variant Graph Support to BioD

Njagi Mwaniki null+dlang at njagi.me
Wed May 29 21:31:54 UTC 2019


On Wednesday, 29 May 2019 at 03:16:19 UTC, Nicholas Wilson wrote:
> On Tuesday, 28 May 2019 at 09:41:18 UTC, Njagi Mwaniki wrote:
>> Hello I’m Njagi Mwaniki,
>>
>> I am part of the 2019  Google Summer of Code under the Open 
>> Bioinformatics Foundation with a project aimed to add 
>> variation graph support to BioD under mentors George Githinji 
>> and Pjotr Prins.
>
> Awsome! can you supply some links please?

I don't have a lot of links but the D lib is here 
https://github.com/biod/biod

I'm prototyping a bit of the data structures here in racket
https://github.com/urbanslug/GSoC-experiments

I plan on writing blog posts soon explaining the graph, it's 
implementation and progress as well.


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