How to read fastly files ( I/O operation)
bioinfornatics
bioinfornatics at fedoraproject.org
Mon Feb 4 06:04:37 PST 2013
Dear,
I am looking to parse efficiently huge file but i think D lacking
for this purpose.
To parse 12 Go i need 11 minutes wheras fastxtoolkit (written in
c++ ) need 2 min.
My code is maybe not easy as is not easy to parse a fastq file
and is more harder when using memory mapped file.
I do not see where i can get some perf as i do not do many copy
and i use mmfile.
fastxtoolkit do not use mmfile and store his result into a
struct array for each sequences but is is still faster!!!
thanks to any help i hope we can create a faster parser otherwise
that is too slow to use D instead C++
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