How to read fastly files ( I/O operation)
bioinfornatics
bioinfornatics at fedoraproject.org
Fri Feb 8 01:08:47 PST 2013
And use size_t instead to int for getChar/getInt method as type
returned
gdmd -w -O -release monarch.d
~ $ time ./monarch
/env/cns/proj/projet_AZH/A/RunsSolexa/121114_FLUOR_C16L5ACXX/AZH_AOSC_8_1_C16L5ACXX.IND1_clean.fastq
globalStats:
A: 1007129068. C: 1350576504. G: 1353023772. M: 0. D: 0. S:
0. H: 0. N: 39413. V: 0. U: 0. W: 0. R: 0. B: 0. Y:
0. K: 0. T: 999786820.
time: 176585
real 2m56.635s
user 2m31.376s
sys 0m23.077s
this program is little less fast than f's program
about parser I would like create a set a biology parser and put
into a lib with a set of common compute as letter counter.
By example you could run a letter counter compute throw a fata or
fastq file.
rename identifier thwow a fata or fastq file.
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