How to read fastly files ( I/O operation)

[monarch_dodra]

On Thursday, 14 February 2013 at 18:31:35 UTC, bioinfornatics 
wrote:
>
>> Mr.Bio, what usage cases you'll be interested in, other than 
>> those counters?
>
> some idea such as letter counting:
> rename identifier
> trimming sequence from quality value to cutoff
> convert to a binary format
> convert to fasta + sff
> merge close sequence to one concenus
> create a brujin graph
> more idea later

OK. I posted the parser here:
http://dpaste.dzfl.pl/37b893ed

This runs on the 2.061. I'll have to make a few changes if you 
need it to run 2.060, to get around some 2.060 specific bugs.

This contains strictly only the parser. If you want, I'll post 
the async file reading stuff I wrote to interface with it.

The example sections should give you a quick idea of how to use 
it.

Tell me what you think about it.